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NCIS Season 9 Spoilers: E.J., Kort, Ray, Tony's "Assignment" & Much More

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The Port-to-Port Killer was finally stopped in the NCIS season finale, but the story arc didn't die with him. If anything, "Pyramid" posed more questions than it answered.

The fallout won't end with Mike Franks' swan song or the SECNAV's resignation, that's for certain. But where do the events of last night leave our team going forward?

Between the file handed to Tony, E.J.'s shady actions, rogue agent Trent Kort, and the mysterious CI-Ray and his connection to Ziva, it's hard to even know where to begin.

NCIS executive producer Gary Glasberg, who wrote the episode, discussed it in an interview today, while teasing the upcoming ninth season as well. Excerpts below:

Picking Up the Pieces

On E.J.'s next move: "She’s giving up her post in Spain and most likely taking a leave of absence, if not more than that. We’ll have to see where things end up for her."

On what E.J. removed from Gayne's body: "It’s intentionally mysterious. It’s a little microchip and will absolutely be something that will come into play next season."

On Gibbs leaving the door open for her return: "This show is good at picking up things that haven’t been touched in awhile and revisiting them when appropriate."

On Cobb's surprising surrender: "I wanted it to be very unexpected and to take [the characters] by surprise as well. There’s a nice little moment where they hesitate because they can’t even wrap their heads around the idea that he’s walked in."

"So there’s a built-in pause that happens before they reach for their weapons that was just a nice little touch that the actors decided to do that I was really happy with."

On the idea for Operation Frankenstein: "We knew that Vance was facing some significant issues after 'Enemies Foreign' and 'Enemies Domestic,' and we recognized that his relationship with the Secretary of the Navy is a complicated one."

"This was an opportunity to connect them both to an operation that they were involved with that could explain some of the layers of their relationship."

"Operation Frankenstein was a concept Vance came up with. SECNAV thought it was worth following through on. They attempted the project, and in many ways it was successful. But there was one aspect that even SECNAV lost control of."

"At the end of this episode, SECNAV recognizes the flaws, and that a lot of the weight of what happened falls on his shoulders, thus the analogy to the pyramid. And then the decision ultimately is his to do the right thing and resign."

The Director

On whether Gibbs knows it was Vance's idea: "I would imagine that Gibbs is probably privy to how a lot of this unfolded, and in some ways, that will even the playing field between Vance and Gibbs a little bit as they move into next season."

"My goal is to have the team, as well as Gibbs and Vance, really have to work together as a unit a little more in Season 9."

On bringing the team together in this year's finale: "It was a very conscious decision on our part. We thought going into the ninth season, and because it seems that audiences really respond when the group has to band together, that it would be a nice change to enter a season from that standpoint instead of breaking them up."

On the role of SECNAV next season: "He’s not an adversary, he just has a different approach to things and there’s information that he’s privy to that will drive us through a lot of Season 9. Politics and Washington are gonna play a big part in this next season. It will give us the opportunity to see another side of NCIS that we haven’t focused on as much."

On whether we've met the person Tony is "assigned" to: "Yes. And that story line will probably pick up in the season opener. That’s definitely something that will impact the team. I’m not sure yet how long it will go on, but it will definitely have ramifications that we’ll follow through for awhile."

On Gibbs' basement project: "If you go all the way back to the mid-January episode called 'Recruited,' that’s when we started to see Gibbs start to build something new in the basement. Based on the letter that Gibbs had been holding to from Franks, the suggestion is that that’s the time when Franks wrote to him and told him about his illness, and knowing it was terminal, that’s when Gibbs started to do this for his friend."

On the death of Mike: "It wasn’t an easy decision for us. We love Muse Watson, we love the character, their relationship is very special and unique."

"The interesting thing is, we were very happy with the way that 'Swan Song' came out and the use of Franks as this voice that spoke to Gibbs internally."

"The opportunity is there for that conscience or voice to return again at some point. So I won’t say that is the last time that you’re gonna see Muse Watson."

Gibbs and Franks

On Ray's text reading “Kort in Tel Aviv. Handle ASAP.”: "Well, it’s supposed to leave you thinking, not only about the relationship of Ray Cruz to his fellow CIA agent Kort and what his assignment is, but also the fact that Kort is in Israel and how that relates to Ziva and her father. That’s something we’ll definitely return to, probably not in the Season 9 premiere."

"Again, one of the highlights for me of working on this show is being able to plant new seeds and revisit them as the new season progresses."

On the McAbby moment: "They have a history together and an emotional connection, and I’m anxious to see what the new season might bring for the two of them. We’ll see as we go along and hopefully have some fun."

On Ziva and Ray: "[They are] a little open-ended at the moment. There isn’t any closure to it. We’ll have to see where it leads, but I think he was pretty clear that he has a job to do at the moment, and that’s gonna be the primary focus for him."

On Jimmy's engagement: "I have a feeling that the diehard fans are gonna really enjoy the fact that Palmer is engaged. There has never been an NCIS wedding, and that might be something fun that we can take advantage of later on."

What did you take away from last night's NCIS season finale, and how do you see these events taking shape when the show returns for Season 9? Discuss below!

Steve Marsi is the Managing Editor of TV Fanatic. Follow him on Google+ or email him here.

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This show is absolutely brilliant. Have been watching the series for years and just gets better and better. All the actors have developed great characters and great sense of humour which makes it easy to watch episodes over again, even down to the farting hippo. Brill keep um coming.

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I also love the show, but what the heck is going on in the latest series. I mean remote controlled genetically modified caterpillars. Have the writers decided to dumb-down? or have they simply assumed that we, the viewers have all elected to have full frontal lobotomies. One of the reasons that I have always liked the programme is that the stories have for the vast majority of time, been believable and the science parts at least based in fact. I really hope this is simply an abberation and we will return to the normal high standard over the next weeks and dont fall into the NCIS Los Angeles trap of unbeleivable stories, ridiculous tech. and psuedo science.

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i kinda wish i was a ncis agent sometimes...

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i just started watching and i luv da show already!!!!!! i need to cath up on old episodes tho... i think the next season starts in march 2012 and i can't wait!!!!!!!!!! Ziva's my fav she kicks total ass:) and i think abby's gr8 2 but just not my fav...

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i love dis episod / NCIS and i can't wait to watch season 9.

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I LOVE NCIS

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cant wait for season 9 to start its the best programme on fx.just love the relationships they all have. love abby think she is brill.

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my husband is the double of toni and has the same personality, how lucky am I?

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I want to know more about Abby, who recently found out that she'd been adopted. And her biological brother, whom she's already met. Will she eventually tell her brother that they are related? Will this plotline feed into a larger plot?

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anyone knows when season 9 is coming out in trinidad

NCIS Quotes

McGee: Rule number 70 - keep digging till you hit bottom.
Abby: McGee! There is no rule 70.
McGee: Well, I--
Abby: You just made up a rule. This McGibbs thing has really gone to your head. I don't even recognize you right now.

Keates: Spider?
Tony: Keates?
Gibbs: You know her?
Tony: Um, well I..in a sort of...yeah. She's Philly PD.
Keates: She was. She's ATF now. Special Agent Zoe Keates. You want to get that gun out of my face and come over here and give me a hug?

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